Bookmarks for June 5th through June 26th

These are my links for June 5th through June 26th:

Middleware and Monorails

Middleware, the point-and-click programmer’s equivalent of Perl. Middleware, yet another layer of largely unnecessary abstraction.

It’s two hours in to the three hour e-commerce process mapping meeting with three sets of consultants in the heart and heat of London with the traffic noise, police sirens and vaguely pleasant Hare Krishna chanting wafting in through the open windows of the meeting room. I’m minding my own business quietly in the corner, designing pipelines, data flows and object models, coding prolifically and generally doing much more useful things in the safe confines of my head when it happens… What’s your middleware? Hmm? What? Was that directed at me? Of course it was. Nuts.

Middleware, middleware, I’d better think fast. Not a term I use but I’m sure I can remember what it actually means. It must sit between things… Oh yes, it’s coming back to me now. Middleware, the point-and-click programmer’s equivalent of Perl. Middleware, yet another layer of largely unnecessary abstraction. An API for APIs. A tool for fooling developers into thinking that they’re not tightly coupling their applications together when instead they’re tightly coupling to a third-party system they have even less control over because they’re incapable of agreeing direct service communication specs with that other application. “It’s ok, it’s standards-based”. Sure it is. Whatever you say… Middleware is the consultants’ friend though – a clever sounding service that does the integration for you but generally requires little direct development and provides easy resale of the same work to multiple clients.

I’ve been developing large-scale, high traffic websites for a few years now and I’ve never had need for a component that specifically markets itself as middleware. Not once. I’ve used plenty of APIs, web services, object brokers, message queues, key-value stores and any other number of components with easily identifiable purposes but I think using middleware for middleware’s sake is still just a little too meta for me. Yessir! It’s a genuine, bona fide, API’d middleware. I see it absolutely as a Springfield Monorail application, but those Shelbyville folk are so much smarter, maybe I should be more like them.

What’s my middleware? None, I don’t have one. I don’t want one, I’m pretty sure I don’t need one. Cue surprised looks, amusement and disbelief.

Ok, twist my arm, I suppose I quite like Zapier. (Ahh, ok, he’s one of us after all)

Update: I tried to find a pretty picture to augment the post with but I couldn’t find anything on Google Images or Flickr that didn’t make me want to punch the screen.

The Importance of Being Open

Openness => Leadership
http://www.flickr.com/photos/psd/3717444865/sizes/m/

Those of you who know me know I’m pretty keen on openness. The hypocrisy of using a Powerbook for my daily work and keeping an iPhone in my pocket continue to not be lost on me, but I want to spend a few lines on the power of openness.

Imagine if you will, a company developing a new laboratory device. The device is amazing and for early-access partners exceeds expectations in terms of performance but the early-access community feeling is that it’s capable of much more.

The company is keen to work with the community but wants to retain control for various reasons – most importantly in order to restrict their support matrix and reduce their long-term headaches. Fair enough. To this end all changes (and we’re talking principally about software changes here, but applies equally to hardware, chemistry etc. too) have to be emailed to the principal developer before they’re considered for incorporation into the product.

Let’s say the device was released to 20 sites worldwide for early-access. Now each one of those institutes is going to want to twiddle and tweak all the settings in order to make the device perform for their experiments.

So now you have community contributions from 20 different sites. Great! No.. wait.. what’s that? The principal developer’s on a tight schedule for the next major release? Oh.. the release is only incorporating changes the company wants to focus on for the mass market (e.g. packaging, polish, robustness). Hmm. Okay so the community patches are put back until next release… then the next…

Then something cool happens. The community sets up their own online exchanges to provide peer-to-peer support. Warranties and support be damned, they’ve managed to make the devices work twice as fast for half the cost of reagents. They’re also bypassing all the artificial delays imposed by the company, receiving updates as quickly as they’re released, and left with the choice of whether to deploy a particular patch or not.

So where’s the company left after all this? Well, the longer this inadvertent exclusion of community continues, the further the company will be left out in the cold. The worse their reputation will be as portrayed by their early-access clients too.

Surely this doesn’t happen? Of course it does. Every day. Companies still fear to engage Open Source as a valid business model and enterprising hackers bypass arbitrary, mostly pointless restrictions on all sorts of devices (*cough* DRM!) to make them work in ways the original manufacturer never intended.

So.. what’s the moral of this story? If you’re developing devices, be they physical or virtual, make them open. Give them simple, open APIs and good examples. Give them a public revision control system like git, or subversion.¬†Self-documentation may sound like a clich√© but there’s nothing like a good usage example (or unit/functional/integration test) to define how to utilise a service.

If your devices are good at what they do (caveat!) then because they’re open, they’ll proceed to dominate the market until something better comes along. The community will adopt them, support them and extend them and you’ll still have sales and core support. New users will want to make the investment simply because of what others have done with the platform.

Ok, so perhaps this is too naieve a standpoint. Big companies can use the weight of their “industry standards”, large existing customer-base, or even ease-of-use to bulldoze widespread adoption but the lack of openness doesn’t suit everybody and my feeling is that a lot of users, or would-be-users don’t appreciate being straight-jacketed into a one-size-fits-all solution. Open FTW!

What can Bioinformatics learn from YouTube?

Caught Matt’s talk this morning at the weekly informatics group meetings

There were general murmurings of agreement amongst the audience but nobody asking the probing questions I’d hope for as a measure of interestedness.

Matt touched upon microformats in all but name – I was really expecting a sell of http://bioformats.org/ , websites as APIs and RESTful web services in particular.

Whilst I’m inclined to agree that standardised, discoverable, reusable web services are largely the way forward (especially as it keeps me in work) I’m not wholly convinced they remove the problems associated with, for example, database connections, database-engine specific SQL, hostnames, ports, accounts etc.

My feeling is that all the problems associated with keeping track of your database credentials are replaced by a different set of problems, albeit more standardised in terms of network protocols in HTTP and REST/CRUD. We now run the risk that what’s fixed in terms of network protocols is pushed higher up the stack and manifests as myriad web services, all different. All these new websites and services use different XML structures and different URL schemes. The XML structures are analogous to database table schema and the URL schemes akin to table or object names.

At least these entities are now discoverable by the end user/developer simply by using the web application – and there’s the big win – transparency and discoverability. There’s also the whole microformat affair – once these really start to take off there’ll be all sorts of arguments about what goes into them, especially in domains like Bio and Chem, not covered by core formats like hCard. But that’s something for another day.

More over at Green Is Good